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Products

Find the right model or tool for your drug discovery work.

AI/ML models and tools available now on TuneLab

Model

AbLab v1, v2

Predicts antibody developability across 22 endpoints, including stability, aggregation, and solubility, from sequence alone.

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Model

Antibody-Antigen Binding Affinity (ΔΔG)

TuneLab’s Antibody–Antigen Binding Affinity model predicts how a specific mutation changes binding affinity between an antibody and its antigen.

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Model

ChemLab v1, v2 Federated

Predicts ADMET and physicochemical properties to help prioritize compounds for synthesis.

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Model

Immunogenicity Model (MHC-II Peptide Presentation)

Predicts MHC class II presentation likelihood and 9-mer binding cores for antibody peptides across 12 HLA-DRB1 alleles.

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Model

in vivo PK (developed by insitro)

Predicts preclinical in vivo PK, including clearance and Vss, across multi species, developed by insitro for Lilly.

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Model

NanoLab (VHH Developability)

Predicts five biophysical developability endpoints for VHH nanobody sequences to rank leads before wet lab testing.

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Workflow

Small Molecule Computational Workflows

Configurable workflows that generate, filter, score, predict properties and rank small molecules to automate drug discovery campaigns.

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ChemLab v1, v2 Federated
Model

ChemLab is Lilly TuneLab's multi-task small molecule property prediction model, covering physicochemical and ADMET endpoints including solubility, lipophilicity, permeability, protein binding, metabolic stability, transporter activity and safety-related liabilities.
You will see ChemLab v1 and ChemLab v2 Federated. ChemLab version 1 was released in June and predicts 33 ADMET endpoints from molecular SMILES using a Chemprop message-passing neural network (MPNN) with task embeddings. The newly released ChemLab v2 Federated is trained through federated learning across Lilly's internal assay collections and contributed TuneLab member data, giving it a wider applicability domain than the previous releases. It is built for scientists prioritizing which compounds to make.

What does the ChemLab v2 Federated model provide?
  • Predictions across a large panel of physicochemical and ADMET endpoints from a single molecular structure input.

  • A substantially broader applicability domain than earlier versions. Roughly a third of the training signal now comes from member contributions spanning many organizations and chemotypes, improving reliability on chemistry outside Lilly's historical space.

  • Explainability indicates which parts of a molecule drive a property prediction. The module can be operated at either the fragment or atom level. For fragment mode, the molecule is fragmented, then attributions are assigned at the fragment level. For atom mode, attributions are assigned at the atom level.

  • Improved uncertainty quantification, so low-confidence predictions on out-of-domain chemistry can be identified and handled differently from confident ones.

  • Adaptive multi-task sharing. Each assay is preserved as its own prediction task with its own head, learning what information is useful across assays while preserving the distinctions that make each endpoint unique. This strengthens predictions through relevant shared evidence for endpoints.

  • Fine-tuning is available for ChemLab. Fine-tuning lets a member adapt the model to their own project. It builds on the shared learnings from the federated datasets, so a member can get useful predictions from a small dataset of their own. Fine-tuned models are private to the member.

Technical specifications
Modality
Small molecule.
Input format
SMILES strings.
Output format
The uploaded file returned with three columns appended per endpoint: a point estimate, plus the lower and upper bound of the conformal prediction interval.
Training data type
Lilly internal physicochemical and ADMET assay collections and contributed member data combined through federated learning, spanning hundreds of thousands of unique molecules across dozens of distinct assay endpoints. The molecular encoder module is pretrained on a billion+ corpus of unlabeled structures.
Predicted endpoint(s)
Regression and classification metrics on held-out test sets built with a global, structure-aware splitting procedure that prevents the same molecule — or a structurally related cluster — appearing in both training and test for any endpoint.
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FAQs
My assay has the same name as a Lilly assay. Are they pooled together?
No. Conceptually related assays are routinely run under different protocols, conditions and units, so each endpoint is kept as a distinct prediction task with its own head. The model learns what to share between them rather than assuming they are equivalent measurements.
How do I know whether to trust a prediction on my chemistry?
Use the uncertainty output. The model reports a per-molecule prediction interval alongside each prediction. A large prediction interval (low confidence) indicates the molecule is expected to have larger-than-usual model error. Use the UQ intervals alongside explainability check the prediction is keyed on chemically sensible substructure. Predictions and uncertainty estimates are computational outputs intended to support compound prioritization. They are not a substitute for experimental validation.
How were the test sets built?
With a splitting procedure that assigns every unique structure, and every structurally related cluster, to train or test sets consistently across all endpoints at once across all tasks for a given partner. This prevents a molecule used to train one endpoint from appearing in the test set of another, which would otherwise inflate reported performance in a multi-task model.
How does the explainability module work?
This post hoc explainability module wraps ChemLab and computes attributions at inference time. The algorithm works by masking portions of the molecular graph and running inference, using the Shapley procedure to assign relative importance values to substructures.
What are the explainability limitations?
Shapley values explain the model's behavior, not necessarily ground truth structure activity relationships, and should complement medicinal chemistry expertise. The fragmentation scheme may produce spurious fragmentation boundaries. Fragment level attributions cannot differentiate intra fragment variation, by construction.
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